Gene Symbol | SMG5 |
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Entrez Gene | 23381 |
Alt Symbol | EST1B, LPTS-RP1, LPTSRP1, SMG-5 |
Species | Human |
Gene Type | protein-coding |
Description | SMG5 nonsense mediated mRNA decay factor |
Other Description | EST1 telomerase component homolog B|EST1-like protein B|Est1p-like protein B|LPTS interacting protein|LPTS-interacting protein|RP11-54H19.7|ever shorter telomeres 1B|hSMG-5|protein SMG5|smg-5 homolog, nonsense mediated mRNA decay factor |
Swissprots | Q659C7 Q96IJ7 Q8IY09 Q5QJE7 D3DVB7 Q8IXC0 Q9UPR3 |
Accessions | EAW52973 EAW52974 Q9UPR3 AB029012 BAA83041 AB085691 BAC53623 AK025988 AK026395 AK027486 BAB55147 AK092183 AL137738 CAH56374 AY168922 AAO17582 AY336728 AAQ84301 BC007292 BC007453 AAH07453 BC038296 AAH38296 CR933677 CT000143 XM_005245049 XP_005245106 XM_011509361 XP_011507663 XM_011509362 XP_011507664 XR_921762 NM_015327 NP_056142 |
Function | Plays a role in nonsense-mediated mRNA decay. Does not have RNase activity by itself. Promotes dephosphorylation of UPF1. Together with SMG7 is thought to provide a link to the mRNA degradation machinery involving exonucleolytic pathways, and to serve as an adapter for UPF1 to protein phosphatase 2A (PP2A), thereby triggering UPF1 dephosphorylation. Necessary for TERT activity. {ECO:0000269|PubMed:17053788}. |
Subcellular Location | Cytoplasm {ECO:0000269|PubMed:14636577}. Nucleus {ECO:0000269|PubMed:14636577}. Note=Predominantly cytoplasmic, and nuclear. Shuttles between nucleus and cytoplasm. Detected in cytoplasmic mRNA decay bodies. |
Tissue Specificity | Ubiquitous. {ECO:0000269|PubMed:12699629, ECO:0000269|PubMed:14636577}. |
Top Pathways | mRNA surveillance pathway |
SMG5 CRISPR/Cas9 KO Plasmid (h) - sc-406989 from Santa Cruz Biotechnology
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SMG5 HDR Plasmid (h) - sc-406989-HDR from Santa Cruz Biotechnology
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SMG5 Double Nickase Plasmid (h) - sc-406989-NIC from Santa Cruz Biotechnology
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SMG5 Double Nickase Plasmid (h2) - sc-406989-NIC-2 from Santa Cruz Biotechnology
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SMG5 CRISPR Activation Plasmid (h) - sc-406989-ACT from Santa Cruz Biotechnology
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SMG5 CRISPR Activation Plasmid (h2) - sc-406989-ACT-2 from Santa Cruz Biotechnology
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SMG5 Lentiviral Activation Particles (h) - sc-406989-LAC from Santa Cruz Biotechnology
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SMG5 Lentiviral Activation Particles (h2) - sc-406989-LAC-2 from Santa Cruz Biotechnology
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SMG5 siRNA (h) - sc-61567 from Santa Cruz Biotechnology
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SMG5 shRNA Plasmid (h) - sc-61567-SH from Santa Cruz Biotechnology
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SMG5 shRNA (h) Lentiviral Particles - sc-61567-V from Santa Cruz Biotechnology
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MISSION® esiRNA - EHU101781 from Sigma-Aldrich
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CompoZr® Knockout ZFN Kit - CKOZFN19790 from Sigma-Aldrich
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CompoZr® Knockout ZFN Kit, ZFN plasmid only - CKOZFND19790 from Sigma-Aldrich
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MISSION® 3′UTR Lenti GoClone™ - HUTR09480 from Sigma-Aldrich
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SMG5 siRNA (Human) - CRH8225 from Cohesion Biosciences
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SMG5 - MBS8241016 from MyBioSource
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shRNA set against Human SMG5 (NM_015327.2) - SHH413412 from Creative biogene
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Human SMG5 siRNA - orb268727 from Biorbyt
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SMG5 shRNA Plasmid (Human) - CHH8225 from Cohesion Biosciences
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SMG5 miRNA 3'UTR clone - MiUTR3H-11573 from Creative biogene
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